PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4221s0008.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 450aa    MW: 50212.2 Da    PI: 9.6683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4221s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-066890123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F+r  nL+ H r H
  Araha.4221s0008.1.p 68 FICEICNKGFKRDQNLQLHRRGH 90
                         89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-76790No hitNo description
Gene3DG3DSA:3.30.160.605.2E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8666890IPR007087Zinc finger, C2H2
PfamPF121711.6E-56890IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0116890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355120110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-7140165No hitNo description
SMARTSM00355200145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MMMPDDHHHL SFPSYVLHQE HITPNPNPNP NHTSSNSAKR KRNLPGNPDP DAEVIALSPN  60
SLMATNRFIC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEQVKKKVY ICPEKSCVHH  120
DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTR EYRCDCGTLF  180
SRKDSFITHR AFCDALAEEN ARFVSVPPAA AAAPAYLNNP PDGEVNLGNI NQNHQQRQVH  240
TTSSPLDQPG FNIHRNDIAF LGQTLPTNVF ASSSSPSPRS ASDSLQNLWH LQGQSSHQWL  300
LNENKNNNIL QRGISKNQEE CEIKNVISNG SLFSSEARNN TNNYNQDCGQ IASMSATALL  360
QKAAQMGSKR SSSSSSNNSK TFGLMTSIFN NKQGENIKTK EVDERGFTRD FLGVGSQHRP  420
WPLLMVNHNL PNSSPSATTD GTPTADMNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4283020.0AF428302.1 Arabidopsis thaliana AT3g45260/F18N11_20 mRNA, complete cds.
GenBankAJ6214930.0AJ621493.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 1 (idz1 gene).
GenBankAY1439360.0AY143936.1 Arabidopsis thaliana At3g45260/F18N11_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877396.10.0zinc finger family protein
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLD7LNN70.0D7LNN7_ARALL; Zinc finger family protein
STRINGscaffold_501386.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.10.0C2H2-like zinc finger protein